to address http://www.w3.org/2011/prov/track/issues/262 :

removed prov:qualified
added qualifiedUsage and friends (and corresponding domains and ranges)
made qualifiedUsage and friends inverse functional.
removed prov:Element b/c it isn't being used in domains and ranges anymore and is distracting
added prov:agent to complete the set with prov:entity and prov:activity
prov:agent domain AgentInvolvement, range Agent
added prov:qualifiedForm and prov:unqualifiedForm annotation properties.
renamed Annotation property involvementClass to qualifiedForm

--- a/ontology/ProvenanceOntology.owl	Tue Mar 06 15:41:31 2012 -0500
+++ b/ontology/ProvenanceOntology.owl	Tue Mar 06 15:42:36 2012 -0500
@@ -1,6 +1,7 @@
 <?xml version="1.0"?>
 
 
+
 <!DOCTYPE rdf:RDF [
     <!ENTITY prov "http://www.w3.org/ns/prov#" >
     <!ENTITY owl "http://www.w3.org/2002/07/owl#" >