prov-dm sections 2 and 3 and images
authorLuc Moreau <l.moreau@ecs.soton.ac.uk>
Tue, 27 Mar 2012 23:02:31 +0100
changeset 2027 1df17d955428
parent 2026 dfa54892dcf4
child 2028 39acde2ba8b7
prov-dm sections 2 and 3 and images
model/glossary.html
model/glossary.js
model/images/OverviewDiagram.png
model/images/OverviewDiagram.svg
model/images/w3-publication1.png
model/images/w3-publication1.svg
model/prov-dm.html
--- a/model/glossary.html	Tue Mar 27 22:24:52 2012 +0100
+++ b/model/glossary.html	Tue Mar 27 23:02:31 2012 +0100
@@ -2,7 +2,7 @@
 <html>
 
 <div class="glossary" id="glossary-entity">  
-<dfn id="concept-entity" title="entity">Entities</dfn> are things one  
+An <dfn id="concept-entity">entity</dfn> is a thing one  
  wants to provide provenance for.  For the purpose of this  
  specification, things can be physical, digital, conceptual, or  
  otherwise; things may be real or imaginary.  
@@ -10,7 +10,7 @@
 
 <span class="glossary" id="glossary-activity">  
 An <dfn id="concept-activity">activity</dfn>
- is something that occurs and acts upon or with entities. 
+ is something that occurs over a period of time and acts upon or with entities. 
 This action can take multiple forms: consuming, processing, transforming, modifying, relocating, using, generating, or being associated with entities. 
 </span>
 
@@ -20,7 +20,7 @@
 
 <span class="glossary" id="glossary-generation">  
 <dfn id="concept-generation">Generation</dfn> is the completion of production of a new entity by an activity.
- This entity become available for usage after this generation. This entity did not exist before generation.
+ This entity becomes available for usage after this generation. This entity did not exist before generation.
 </span>
 
 <span class="glossary" id="glossary-usage">  
@@ -42,8 +42,8 @@
 A <dfn id="concept-collection">collection</dfn> is an entity that provides  structure to some constituents, which are themselves entities. 
 </span>
 
-<span class="glossary" id="glossary-accountEntity">  
-An <dfn id="concept-accountEntity">accountEntity</dfn> is an entity that contains a bundle of provenance assertions. 
+<span class="glossary" id="glossary-account">  
+An <dfn id="concept-account">account</dfn> is an entity that contains a bundle of provenance assertions. 
 </span>
 
 <span class="glossary" id="glossary-provenance">  
--- a/model/glossary.js	Tue Mar 27 22:24:52 2012 +0100
+++ b/model/glossary.js	Tue Mar 27 23:02:31 2012 +0100
@@ -9,14 +9,14 @@
 '<html> ' + 
 ' ' + 
 '<div class="glossary" id="glossary-entity">   ' + 
-'<dfn id="concept-entity" title="entity">Entities</dfn> are things one   ' + 
+'An <dfn id="concept-entity">entity</dfn> is a thing one   ' + 
 ' wants to provide provenance for.  For the purpose of this   ' + 
 ' specification, things can be physical, digital, conceptual, or   ' + 
 ' otherwise; things may be real or imaginary.   ' + 
 '</div>   ' + 
 ' ' + 
 '<span class="glossary" id="glossary-activity">   ' + 
-'An <dfn id="concept-activity">activity</dfn> is something that occurs and acts upon or with entities.   ' + 
+'An <dfn id="concept-activity">activity</dfn> is something that occurs over a period of time and acts upon or with entities.   ' + 
 'This action can take multiple forms: consuming, processing, transforming, modifying, relocating, using, generating, or being associated with entities.  ' + 
 '</span> ' + 
 ' ' + 
@@ -26,7 +26,7 @@
 ' ' + 
 '<span class="glossary" id="glossary-generation">   ' + 
 '<dfn id="concept-generation">Generation</dfn> is the completion of production of a new entity by an activity. ' + 
-' This entity become available for usage after this generation. This entity did not exist before generation. ' + 
+' This entity becomes available for usage after this generation. This entity did not exist before generation. ' + 
 '</span> ' + 
 ' ' + 
 '<span class="glossary" id="glossary-usage">   ' + 
@@ -48,8 +48,8 @@
 'A <dfn id="concept-collection">collection</dfn> is an entity that provides  structure to some constituents, which are themselves entities.  ' + 
 '</span> ' + 
 ' ' + 
-'<span class="glossary" id="glossary-accountEntity">   ' + 
-'An <dfn id="concept-accountEntity">accountEntity</dfn> is an entity that contains a bundle of provenance assertions.  ' + 
+'<span class="glossary" id="glossary-account">   ' + 
+'An <dfn id="concept-account">account</dfn> is an entity that contains a bundle of provenance assertions.  ' + 
 '</span> ' + 
 ' ' + 
 '<span class="glossary" id="glossary-provenance">   ' + 
Binary file model/images/OverviewDiagram.png has changed
--- a/model/images/OverviewDiagram.svg	Tue Mar 27 22:24:52 2012 +0100
+++ b/model/images/OverviewDiagram.svg	Tue Mar 27 23:02:31 2012 +0100
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@@ -22,11 +22,20 @@
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--- a/model/prov-dm.html	Tue Mar 27 22:24:52 2012 +0100
+++ b/model/prov-dm.html	Tue Mar 27 23:02:31 2012 +0100
@@ -429,7 +429,7 @@
 
 
 <div class="anexample" id="activity-example">
-<p>An activity may be the publishing of a document on the web, sending a twitter message, extracting metadata embedded in a file, or driving a car from Boston to Cambridge, assembling a data set based on a set of measurements, performing a statistical analysis over a data set, sorting news items according to some criteria, running a SPARQL query over a triple store, and editing a file.</p>
+<p>An activity may be the publishing of a document on the Web, sending a twitter message, extracting metadata embedded in a file, driving a car from Boston to Cambridge, assembling a data set based on a set of measurements, performing a statistical analysis over a data set, sorting news items according to some criteria, running a SPARQL query over a triple store, and editing a file.</p>
 </div>
 
 </section>
@@ -452,16 +452,16 @@
 
 
 
-<p><div class="anexample" id="generation-example">
-Examples of generation are the completed creation of a file by a
+<div class="anexample" id="generation-example">
+<p>Examples of generation are the completed creation of a file by a
 program, the completed creation of a linked data set, and the completed
 publication of a new version of a document.
 </div>
 
 
-<p>
+
 <div class="anexample" id="usage-example">
-Usage examples include a procedure beginning to consume an argument, a service starting to read a value on a port, a program beginning to read a configuration
+<p>Usage examples include a procedure beginning to consume an argument, a service starting to read a value on a port, a program beginning to read a configuration
 file, or the point at which an ingredient, such as eggs, is being added in a baking activity. Usage may entirely consume an entity (e.g. eggs are no longer available after being added to
 the mix); alternatively, a same entity may be used multiple times, possibly by different activities (e.g. a file on a file system can be read indefinitely).
 </div>
@@ -493,8 +493,8 @@
 
 
 <p>
-The definition of agent intentionally stays away from using concepts such as enabling, causing, initiating, affecting, etc, because many entities also enable, cause, initiate, and affect in some way
-the activities. Concepts such as initiating are themselves defined as relations between agent and activities.   So the notion of having some degree of responsibility is really what makes an agent.</p>
+The definition of agent intentionally stays away from using concepts such as enabling, causing, initiating, triggering, affecting, etc, because many entities also enable, cause, initiate, and affect in some way
+the activities. Concepts such as triggers are themselves defined in relations between entities and activities.   So the notion of having some degree of responsibility is really what makes an agent.</p>
 
 
 <p>An agent is a particular type of Entity. This means that the model can be
@@ -513,8 +513,8 @@
 <p>
 <span class="glossary-ref" ref="glossary-plan"  withspan="true">
 </span>
-PROV-DM is not
-prescriptive about the nature of plans, their representation, the
+There exist no
+prescriptive requirement on the nature of plans, their representation, the
 actions or steps they consist of, or their intended goals.  Since plans may evolve over time,
 it may become necessary to track their provenance, so plans themselves are
 entities. Representing the plan explicitly in the provenance can be useful for various tasks: for example, to  
@@ -529,7 +529,7 @@
 
 
 
-<p>Three types of agents are recognized by PROV-DM because they are commonly encountered in applications making data and documents available on the Web: persons, software agents, and organizations.</p>
+<p>Three types of agents are recognized because they are commonly encountered in applications making data and documents available on the Web: persons, software agents, and organizations.</p>
 
 <div class="anexample" id="types-of-agents-example">
 <p> A Web site and service selling books on the Web and the company hosting 
@@ -537,7 +537,7 @@
 </div>
 
 <p>
-<span class="glossary-ref" ref="glossary-collection"  withspan="true"></span> This concept allows for the provenance of the collection, but also of its constituents to be expressed.  Such a notion of collection corresponds to a wide variety of  concrete data structures, such as a <em>maps</em>, <em>dictionaries</em> or <em>associative arrays</em>.</p>
+<span class="glossary-ref" ref="glossary-collection"  withspan="true"></span> This concept allows for the provenance of the collection, but also of its constituents to be expressed.  Such a notion of collection corresponds to a wide variety of  concrete data structures, such as a <em>maps</em>, <em>dictionaries</em>, or <em>associative arrays</em>.</p>
 
 <div class="anexample" id="collection-example">
 <p>
@@ -547,8 +547,8 @@
 
 <!-- alternative names: provenance record, bundle -->
 <p>
-<span class="glossary-ref" ref="glossary-accountEntity"  withspan="true">
-</span>By making it an entity, PROV-DM allows for provenance of provenance to be expressed.
+<span class="glossary-ref" ref="glossary-account"  withspan="true">
+</span>Making an account an entity allows for provenance of provenance to be expressed.
 
 <div class="anexample" id="account-example">
 <p>
@@ -556,8 +556,8 @@
 a resource, they may want to analyze the resource's provenance, but also determine
 who its provenance is attributed to, and when it was
 generated. In other words, users need to be able to determine the provenance of provenance.
-Hence, in the PROV data model, provenance is also
-regarded as an entity, an AccountEntity; using PROV-DM, provenance of provenance can then be
+Hence, provenance is also
+regarded as an entity (of type Account), by which provenance of provenance can then be
 expressed.
 </p>
 </div>
@@ -581,17 +581,16 @@
 For example, a programmer and a researcher could both be
 associated with running a workflow, but it may not matter which
 programmer clicked the button to start the workflow while it would
-matter a lot which researcher told the programmer to do so.  So there
-is some notion of responsibility that needs to be captured. </p>
+matter a lot which researcher told the programmer to do so.  </p>
 
 <!-- <div class="note"> to be revisited for WD5. Paolo's proposed text: "Agents are defined in sec. 2.1 as having some kind of responsibility for activities. However, one may want to be more specific regarding the degrees of an agent's responsibility. For example, ..."</div>
 -->
 
 
-<p>Provenance reflects activities that have occurred.  In some  
+<p>Furthermore, provenance reflects activities that have occurred.  In some  
 cases, those activities reflect the execution of a plan that was  
-designed in advance to guide the execution.  PROV-DM allows associating
-a plan to an activity, which represents what was intended to  
+designed in advance to guide the execution.  
+A plan may be associated to an activity, which represents what was intended to  
 happen.  </p>
 
 <!-- <div class="note">Proposal: remove the above para as it repeats from 2.3. Proposed text: "the <em>activity association</em> relation provides a way to indicate that an agent is responsible for an activity, possibly with an associated plan."[PM]</div> -->
@@ -602,18 +601,18 @@
 </p>
 
 <div class="anexample" id="association-example">
-<p>Examples of association between an activity and agent are:
+<p>Examples of association between an activity and an agent are:
 <ul>
 <li>creation of a web page under the guidance of a designer;</li>
 <li>various forms of participation in a panel discussion, including audience member, panelist, or panel chair;</li>
 <li>a public event, sponsored by a company, and hosted by a museum;</li>
-<li>an XSLT transform initiated by a user;</li>
+<li>an XSLT transform launched by a user based on an XSL style sheet (a plan).</li>
 </ul>
 </div>
 
 <p>
 <span class="glossary-ref" ref="glossary-responsibility"  withspan="true">
-</span> The nature of this relation is intended to be broad,  including delegation or a contractual relation. </p>
+</span> The nature of this relation is intended to be broad,  including delegation or contractual relation. </p>
 
 <!--<div class="note">Propose to rephrase as follows: <br/>
 A relation between two agents, denoted <dfn title="concept-responsibilityChain">actedOnBehalfOf</dfn> indicates that 
@@ -676,7 +675,7 @@
   </figure>
 </div>
 
-<p>Figure <a href="#">overview-types-and-relations</a> is not intended to be complete. It only illustrates the types and relations exploited in the example discussed in the next section. They will then be explained in detail in Section <a href="#data-model-components">data-model-components</a>.
+<p>Figure <a href="#">overview-types-and-relations</a> is not intended to be complete. It only illustrates  types and relations from Section <a href="#starting-points">starting-points</a> and exploited in the example discussed in the next section. They will then be explained in detail in Section <a href="#data-model-components">data-model-components</a>.
 The third column of Table <a href="#overview-types-and-relations">(Mapping of Provenance concepts to   types and relations in  PROV-DM)</a> lists names that are part of a textual notation to write instances of the PROV-DM data model. This notation, referred to as the PROV-N notation, is outlined in the next section. </p>
 
 <!--
@@ -690,7 +689,7 @@
 <section id="prov-n"> 
 <h2>PROV-N: The Provenance Notation</h2>
 
-<p>A key goal of PROV-DM is the specification of a machine-processable data model for provenance so that application can retrieve provenance and reason about it. As such, representations of PROV-DM are available in RDF and XML.
+<p>A key goal of PROV-DM is the specification of a machine-processable data model for provenance so that applications can retrieve provenance and reason about it. As such, representations of PROV-DM are available in RDF and XML.
 </p>
 
 <p>However, it is important to provide instances of provenance for human consumption, as in this document or elsewhere.
@@ -718,7 +717,7 @@
 <pre class="codeexample" >
 activity(a1, [prov:type="createFile"])
 </pre>
-Two entities with identifiers <span class="name">e1</span> and identifiers <span class="name">e2</span>.
+Two entities with identifiers <span class="name">e1</span> and <span class="name">e2</span>.
 <pre class="codeexample" >
 entity(e1)
 entity(e2)
@@ -759,7 +758,7 @@
 must be preceded by a "publication request" to the Webmaster.  The
 very first version of a technical report must also preceded by a
 "transition request" to be approved by the W3C director.  All working
-drafts are made available at a unique URI.  In this scenario, we consider two successive versions of a given report, the policy according they were published, and the associated requests.
+drafts are made available at a unique URI.  In this scenario, we consider two successive versions of a given report, the policy according to which they were published, and the associated requests.
 </p>
 
 <p>
@@ -791,13 +790,13 @@
 </li>
 <li>There is a publication activity.
 <pre>
-activity(ex:act2,,,[prov:type="publish"])
+activity(ex:act2,[prov:type="publish"])
 </pre>
 </li>
 
 <li>The technical report was generated by the publication activity: this is a <a title="concept-Generation">Generation</a>.
 <pre>
-wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2)
+wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -)
 </pre>
 </li>
 
@@ -810,7 +809,7 @@
 
 <li>The activity required a publication request: this is a <a title="concept-Usage">Usage</a>.
 <pre>
-used(ex:act2,ar3:0111)
+used(ex:act2, ar3:0111, -)
 </pre>
 </li>
 
@@ -823,10 +822,10 @@
 
 <p>
 Provenance descriptions can be <em>illustrated</em> graphically. The illustration is not intended to represent all the details of the model, but it is intended to show the essence of a set of
-provenance statements.  Therefore, it should not be seen as an alternate notation for expressing provenance.</p>
-
-<p>The graphical illustration takes the form of a graph. Entities, activities and agents are represented as nodes, with oval, rectangular, and octagonal shapes, respectively.  Usage,
-Generation, Derivation, and Activity Association are represented as directed edges.</p>
+provenance descriptions.  Therefore, it should not be seen as an alternate notation for expressing provenance.</p>
+
+<p>The graphical illustration takes the form of a graph. Entities, activities and agents are represented as nodes, with oval, rectangular, and pentagonal shapes, respectively.  Usage,
+Generation, Derivation, and Association are represented as directed edges.</p>
 
 <p>Entities are laid out according to the ordering of their generation.  We endeavor to show time progressing from left to right. This means that edges for Usage, Generation,
 Derivation, Association typically point leftwards</p>
@@ -844,7 +843,7 @@
 </div>
 
 
-<p> This simple example has shown a variety of PROV-DM constructs, such as Entity, Agent, Activity, Usage, Generation, Derivation, and ActivityAssociation. In this example, it happens that all entities were already Web resources, with readily available URIs, which we used. We note that some of the resources are public, whereas others have restricted access: provenance statements only make use of their identifiers. If identifiers do not pre-exist, e.g. for activities, then they can be generated, for instance <span class="name">ex:act2</span>, occurring in the namespace identified by prefix <span class="name">ex</span>.  We note that the URI scheme developed by W3C is particularly suited for expressing provenance of these reports, since each URI denotes a specific version of a report. It then becomes very easy to relate the various versions, with PROV-DM constructs. </p>
+<p> This simple example has shown a variety of PROV-DM constructs, such as Entity, Agent, Activity, Usage, Generation, Derivation, and Association. In this example, it happens that all entities were already Web resources, with readily available URIs, which we used. We note that some of the resources are public, whereas others have restricted access: provenance statements only make use of their identifiers. If identifiers do not pre-exist, e.g. for activities, then they can be generated, for instance <span class="name">ex:act2</span>, occurring in the namespace identified by prefix <span class="name">ex</span>.  We note that the URI scheme developed by W3C is particularly suited for expressing provenance of these reports, since each URI denotes a specific version of a report. It then becomes very easy to relate the various versions, with PROV-DM constructs. We note that an Association is a ternary relation (represented by a multi-edge labeled wasAssociatedWith) from an activity to an agent and a plan.</p>
 
 
 </section>
@@ -884,13 +883,13 @@
 
 <li>There is an editing activity.
 <pre>
-activity(ex:edit1,,,[prov:type="edit"])
+activity(ex:edit1,[prov:type="edit"])
 </pre>
 </li>
 
 <li>The technical report was generated by the editing activity: this is a <a title="concept-generation">Generation</a>.
 <pre>
-wasGeneratedBy(tr:WD-prov-dm-20111215, ex:edit1)
+wasGeneratedBy(tr:WD-prov-dm-20111215, ex:edit1, -)
 </pre>
 </li>
 
@@ -904,8 +903,8 @@
 
 <li>Agents were assigned various responsibilities in the editing activity: contributor and editor.
 <pre>
-wasAssociatedWith(ex:edit1, ex:Paolo, [prov:role="editor"])
-wasAssociatedWith(ex:edit1, ex:Simon, [prov:role="contributor"])
+wasAssociatedWith(ex:edit1, ex:Paolo, -, [prov:role="editor"])
+wasAssociatedWith(ex:edit1, ex:Simon, -, [prov:role="contributor"])
 </pre>
 </li>
 </ul>
@@ -928,14 +927,14 @@
 who the provenance is attributed to, and when it was
 generated, etc. In other words, we need to be able to express the provenance of provenance.</p>
 
-<p>No new mechanism is required to support this requirement.  PROV-DM makes the assumption that provenance statements have been bundled up, and named, by some mechanism outside the scope of PROV-DM. For instance, in this case, provenance statements were put in a file and exposed on the Web, respectively at <a href="http://dvcs.w3.org/hg/prov/raw-file/default/model/working-copy/examples/w3c-publication1.pn">ex:prov1</a> and <a href="http://dvcs.w3.org/hg/prov/raw-file/default/model/working-copy/examples/w3c-publication3.pn">ex:prov3</a>.   To express their respective provenance, these resources must be seen as entities, and all the constructs of PROV-DM are now available to characterize their provenance. In the example below, <span class="name">ex:prov1</span> is attributed to the agent <span class="name">w3:Consortium</span>, whereas <span class="name">ex:prov3</span> to <span class="name">ex:Simon</span>.
+<p>No new mechanism is required to support this requirement.  PROV-DM makes the assumption that provenance statements have been bundled up, and named, by some mechanism outside the scope of PROV-DM. For instance, in this case, provenance statements were put in a file and exposed on the Web, respectively at <a href="examples/w3c-publication1.pn">ex:w3c-publication1.pn</a> and <a href="examples/w3c-publication3.pn">ex:w3c-publication3.pn</a>.   To express their respective provenance, these resources must be seen as entities, and all the constructs of PROV-DM are now available to characterize their provenance. In the example below, <span class="name">ex:w3c-publication1.pn</span> is attributed to the agent <span class="name">w3:Consortium</span>, whereas <span class="name">ex:w3c-publication3.pn</span> to <span class="name">ex:Simon</span>.
 
 <pre>
-entity(ex:prov1, [prov:type="prov:AccountEntity" %% xsd:QName ])
-wasAttributedTo(ex1:prov1,w3:Consortium)
-
-entity(ex:prov3, [prov:type="prov:AccountEntity" %% xsd:QName ])
-wasAttributedTo(ex1:prov3,ex:Simon)
+entity(ex:w3c-publication1.pn, [prov:type="prov:Account" %% xsd:QName ])
+wasAttributedTo(ex:w3c-publication1.pn, w3:Consortium)
+
+entity(ex:w3c-publication3.pn, [prov:type="prov:Account" %% xsd:QName ])
+wasAttributedTo(ex:w3c-publication3.pn, ex:Simon)
 </pre>
 
 
@@ -2524,7 +2523,7 @@
 <li> relying on specific serializations to name bundles of descriptions;</li>
 <li> using the idea of a service that is capable of associating provenance descriptions to whom they are attributed to.</li>
 </ul>
-<p>Even though a mechanism for blundling up provenance descriptions and naming them is not part of PROV-DM, the idea of a bundle of descriptions is crucial to the PROV approach. Indeed, it allows multiple provenance perspectives to be provided for a given entity. It is also the mechanism by which provenance of provenance can be expressed. Such a named bundle is being referred to as an <dfn>account</dfn> and is regarded as an <a title="concept-accountEntity">AccountEntity</a> so that its provenance can be expressed.   The notion of account is specified in the companion specification [[PROV-DM-CONSTRAINTS]], as well as constraint that  <dfn>structurally well-formed</dfn> descriptions are expected to satisfy.</p>
+<p>Even though a mechanism for blundling up provenance descriptions and naming them is not part of PROV-DM, the idea of a bundle of descriptions is crucial to the PROV approach. Indeed, it allows multiple provenance perspectives to be provided for a given entity. It is also the mechanism by which provenance of provenance can be expressed. Such a named bundle is being referred to as an <dfn>account</dfn> and is regarded as an <a title="concept-account">Account</a> so that its provenance can be expressed.   The notion of account is specified in the companion specification [[PROV-DM-CONSTRAINTS]], as well as constraint that  <dfn>structurally well-formed</dfn> descriptions are expected to satisfy.</p>
 </li>