TMO-Indivo: changeset 41:0c8e6c73ea56

--- a/syntheticPatients/AD_PCHR_1-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_1-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,27 +18,27 @@
       <cpr:patientID>000000001</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>George Andrew Tour</foaf:name>
+         <foaf:name>George Andrew Tour</foaf:name>
       <foaf:givenName>George</foaf:givenName>
       <foaf:familyName>Tour</foaf:familyName>
-      <foaf:mbox rdf:resource="mailto:gtour@hotmail.com"/>
-      <foaf:mbox rdf:resource="mailto:george.tour@technology.com"/>
-    
-    
-    
-    
-    
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+         <foaf:mbox rdf:resource="mailto:gtour@hotmail.com"/>
+         <foaf:mbox rdf:resource="mailto:george.tour@technology.com"/>
+         
+         
+         
+         
+         
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>Henry No</foaf:name>
+         <foaf:name>Henry No</foaf:name>
       <foaf:givenName>Henry</foaf:givenName>
       <foaf:familyName>No</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1934-05-15" indivo:gender="Male&#34;&#xA;      "/>
    </rdf:Description>
@@ -199,7 +199,7 @@
             <rdf:type rdf:resource="Warfarin_Sensitivity"/>
             <!--indivo:dateMeasured 2009-05-18 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_VKOR"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_VKOR"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>
@@ -210,7 +210,7 @@
             <rdf:type rdf:resource="Warfarin_Sensitivity"/>
             <!--indivo:dateMeasured 2009-05-18 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_CPC9"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_CPC9"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>
@@ -349,7 +349,7 @@
             <rdf:type rdf:resource="ADmark_Alzheimers_Evaluation"/>
             <!--indivo:dateMeasured 2009-07-16 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_APOE4"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_APOE4"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>

--- a/syntheticPatients/AD_PCHR_2-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_2-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,26 +18,26 @@
       <cpr:patientID>000000002</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>Monica Mary Mall</foaf:name>
+         <foaf:name>Monica Mary Mall</foaf:name>
       <foaf:givenName>Monica</foaf:givenName>
       <foaf:familyName>Mall</foaf:familyName>
-      <foaf:mbox rdf:resource="mailto:mmall@hotmail.com"/>
-      <foaf:mbox rdf:resource="mailto:false"/>
-    
-    
-    
-    
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+         <foaf:mbox rdf:resource="mailto:mmall@hotmail.com"/>
+         <foaf:mbox rdf:resource="mailto:false"/>
+         
+         
+         
+         
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>Bill Stall</foaf:name>
+         <foaf:name>Bill Stall</foaf:name>
       <foaf:givenName>Bill</foaf:givenName>
       <foaf:familyName>Stall</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1937-05-15" indivo:gender="Female&#34;&#xA;      "/>
    </rdf:Description>
@@ -229,7 +229,7 @@
             <rdf:type rdf:resource="ADmark_Alzheimers_Evaluation"/>
             <!--indivo:dateMeasured 2004-10-01 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_APOE4"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_APOE4"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>
@@ -546,7 +546,7 @@
             <rdf:type rdf:resource=""/>
             <!--indivo:dateMeasured 2008-03-19 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_CYP2C19"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_CYP2C19"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>
@@ -603,7 +603,7 @@
             <rdf:type rdf:resource=""/>
             <!--indivo:dateMeasured 2008-05-17 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_RP4-669P10_2"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_RP4-669P10_2"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>

--- a/syntheticPatients/AD_PCHR_3-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_3-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,26 +18,26 @@
       <cpr:patientID>000000003</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>Benny Smith</foaf:name>
+         <foaf:name>Benny Smith</foaf:name>
       <foaf:givenName>Benny</foaf:givenName>
       <foaf:familyName>Smith</foaf:familyName>
-      <foaf:mbox rdf:resource="mailto:benny.smith@pharma.com"/>
-    
-    
-    
-    
-    
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+         <foaf:mbox rdf:resource="mailto:benny.smith@pharma.com"/>
+         
+         
+         
+         
+         
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>Sridhar Banerjee</foaf:name>
+         <foaf:name>Sridhar Banerjee</foaf:name>
       <foaf:givenName>Sridhar</foaf:givenName>
       <foaf:familyName>Banerjee</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1946-12-07" indivo:gender="Male&#34;&#xA;      "/>
    </rdf:Description>

--- a/syntheticPatients/AD_PCHR_4-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_4-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,27 +18,27 @@
       <cpr:patientID>000000004</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>Edward Quesada</foaf:name>
+         <foaf:name>Edward Quesada</foaf:name>
       <foaf:givenName>Edward</foaf:givenName>
       <foaf:familyName>Quesada</foaf:familyName>
-      <foaf:mbox rdf:resource="mailto:eq@hotmail.com"/>
-      <foaf:mbox rdf:resource="mailto:equesada@msscc.edu"/>
-    
-    
-    
-    
-    
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+         <foaf:mbox rdf:resource="mailto:eq@hotmail.com"/>
+         <foaf:mbox rdf:resource="mailto:equesada@msscc.edu"/>
+         
+         
+         
+         
+         
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>Margaret Cho</foaf:name>
+         <foaf:name>Margaret Cho</foaf:name>
       <foaf:givenName>Margaret</foaf:givenName>
       <foaf:familyName>Cho</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1931-09-12" indivo:gender="Male&#34;&#xA;      "/>
    </rdf:Description>
@@ -202,7 +202,7 @@
             <rdf:type rdf:resource="ADmark_Alzheimers_Evaluation"/>
             <!--indivo:dateMeasured 2009-07-16 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_APOE4"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_APOE4"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>

--- a/syntheticPatients/AD_PCHR_5-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_5-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,27 +18,27 @@
       <cpr:patientID>000000005</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>Georg Steffen Möller</foaf:name>
+         <foaf:name>Georg Steffen Möller</foaf:name>
       <foaf:givenName>Georg</foaf:givenName>
       <foaf:familyName>Möller</foaf:familyName>
-      <foaf:mbox rdf:resource="mailto:georg.moeller@mail.de"/>
-    
-    
-    
-    
-    
-    
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+         <foaf:mbox rdf:resource="mailto:georg.moeller@mail.de"/>
+         
+         
+         
+         
+         
+         
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>David Winizki</foaf:name>
+         <foaf:name>David Winizki</foaf:name>
       <foaf:givenName>David</foaf:givenName>
       <foaf:familyName>Winizki</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1945-04-05" indivo:gender="Male&#34;&#xA;      "/>
    </rdf:Description>

--- a/syntheticPatients/AD_PCHR_6-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_6-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,27 +18,27 @@
       <cpr:patientID>000000006</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>Marianne Huber</foaf:name>
+         <foaf:name>Marianne Huber</foaf:name>
       <foaf:givenName>Gerlinde</foaf:givenName>
       <foaf:familyName>Huber</foaf:familyName>
-      <foaf:mbox rdf:resource="mailto:mhuber@hotmail.com"/>
-      <foaf:mbox rdf:resource="mailto:Marianne.huber@technology.com"/>
-    
-    
-    
-    
+         <foaf:mbox rdf:resource="mailto:mhuber@hotmail.com"/>
+         <foaf:mbox rdf:resource="mailto:Marianne.huber@technology.com"/>
+         
+         
+         
+         
 
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>Larry Lu</foaf:name>
+         <foaf:name>Larry Lu</foaf:name>
       <foaf:givenName>Larry</foaf:givenName>
       <foaf:familyName>Lu</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1940-01-01" indivo:gender="Female&#34;&#xA;      "/>
    </rdf:Description>
@@ -145,7 +145,7 @@
             <rdf:type rdf:resource="ADmark_Alzheimers_Evaluation"/>
             <!--indivo:dateMeasured 2009-07-20 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_APOE4"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_APOE4"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>

--- a/syntheticPatients/AD_PCHR_7-tmo.rdf	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/AD_PCHR_7-tmo.rdf	Fri Feb 25 04:17:25 2011 -0500
@@ -18,27 +18,27 @@
       <cpr:patientID>000000007</cpr:patientID>
    </rdf:Description>
    <cpr:patient rdf:nodeID="patient">
-      <foaf:name>Julianne Sarah Christopherson</foaf:name>
+         <foaf:name>Julianne Sarah Christopherson</foaf:name>
       <foaf:givenName>Julianne</foaf:givenName>
       <foaf:familyName>Christopherson</foaf:familyName>
-    
-    
-    
-    
-    
-    
-    
-   </cpr:patient>
-   <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-      <rdfs:subClassOf rdf:resource="cpr:physician"/>
+         
+         
+         
+         
+         
+         
+         
+      </cpr:patient>
+   <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+      <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/>
       <!--ont--></rdf:Description>
    <trans:PrimaryCarePhysician rdf:nodeID="pricare">
-      <foaf:name>Michael Matthews</foaf:name>
+         <foaf:name>Michael Matthews</foaf:name>
       <foaf:givenName>Michael</foaf:givenName>
       <foaf:familyName>Matthews</foaf:familyName>
-      
-      
-    </trans:PrimaryCarePhysician>
+         
+         
+      </trans:PrimaryCarePhysician>
    <rdf:Description rdf:nodeID="patient">
       <trans:demographics indivo:dateOfBirth="1978-01-31" indivo:gender="Female&#34;&#xA;      "/>
    </rdf:Description>
@@ -132,7 +132,7 @@
             <rdf:type rdf:resource="ADmark_Alzheimers_Evaluation"/>
             <!--indivo:dateMeasured 2009-01-20 ;--><trans:result>
                <SNPResult>
-                  <trans:feature rdf:resource="variant_APOE4"/>
+                  <trans:feature rdf:resource="tag:eric@w3.org:2009/tmo/translator#variant_APOE4"/>
                   <trans:present>true</trans:present>
                </SNPResult>
             </trans:result>

--- a/syntheticPatients/Indivo2RDFXML.xsl	Thu Feb 24 15:12:05 2011 -0500
+++ b/syntheticPatients/Indivo2RDFXML.xsl	Fri Feb 25 04:17:25 2011 -0500
@@ -60,8 +60,8 @@
 </xsl:template>
 
 <xsl:template match="in:PrimaryCarePhysician">
-  <rdf:Description rdf:about="trans:PrimaryCarePhysician">
-    <rdfs:subClassOf rdf:resource="cpr:physician"/><xsl:comment>ont</xsl:comment>
+  <rdf:Description rdf:about="tag:eric@w3.org:2009/tmo/translator#PrimaryCarePhysician">
+    <rdfs:subClassOf rdf:resource="http://purl.org/cpr/0.75#physician"/><xsl:comment>ont</xsl:comment>
   </rdf:Description>
   <xsl:call-template name="contact">
     <xsl:with-param name="subject" select="'pricare'"/>
@@ -236,7 +236,7 @@
    <xsl:variable name="primary-synonymL"  select="normalize-space($variant-synonyms[1])"/>
    <xsl:variable name="primary-synonym"   select="concat('variant_',translate($primary-synonymL,'>.:@','____'))"/>
    <trans:result><SNPResult>
-     <trans:feature><xsl:attribute name="rdf:resource"><xsl:value-of select="$primary-synonym"/></xsl:attribute></trans:feature>
+     <trans:feature><xsl:attribute name="rdf:resource"><xsl:value-of select="concat('tag:eric@w3.org:2009/tmo/translator#', $primary-synonym)"/></xsl:attribute></trans:feature>
      <trans:present>true</trans:present>
    </SNPResult></trans:result>
 </xsl:template>

author	Eric Prud'hommeaux <eric@w3.org>
	Fri, 25 Feb 2011 04:17:25 -0500
changeset 41	0c8e6c73ea56
parent 40	fa011128db3b
child 42	c32567b364d3

syntheticPatients/AD_PCHR_1-tmo.rdf
syntheticPatients/AD_PCHR_2-tmo.rdf
syntheticPatients/AD_PCHR_3-tmo.rdf
syntheticPatients/AD_PCHR_4-tmo.rdf
syntheticPatients/AD_PCHR_5-tmo.rdf
syntheticPatients/AD_PCHR_6-tmo.rdf
syntheticPatients/AD_PCHR_7-tmo.rdf
syntheticPatients/Indivo2RDFXML.xsl